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SpiecEasi - Sparse Inverse Covariance for Ecological Statistical Inference
Estimate networks from the precision matrix of compositional microbial abundance data.
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softwaremicrobiomemetagenomicsgraphandnetworknetworkinferenceopenblascpp
9.58 score 230 stars 792 scriptspulsar - Parallel Utilities for Lambda Selection along a Regularization Path
Model selection for penalized graphical models using the Stability Approach to Regularization Selection ('StARS'), with options for speed-ups including Bounded StARS (B-StARS), batch computing, and other stability metrics (e.g., graphlet stability G-StARS). Christian L. Müller, Richard Bonneau, Zachary Kurtz (2016) <doi:10.48550/arXiv.1605.07072>.
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graphical-models
7.33 score 10 stars 1 dependents 84 scripts 2.1k downloads